书城自然科学分子模拟力场方法与应用
8392100000035

第35章 参考文献(6)

209.Stillinger,F.H.;Rahman,A.,ImprovedSimulationofLiquidWaterbyMolecularDynamics,J.Chem.

Phys.1974,60:1545-1557.

210.Headgordon,T.;Stillinger,F.H.,Anorientationalperturbationtheoryforpureliquidwater,J.Chem.

Phys.1993,98:3313-3327.

211.Lemberg,H.L.;StillingerF.H.,Central-ForceModelforLiquidWater,J.Chem.Phys.1975,62:

1677.

212.Berendsen,H.J.C.,Postma,J.P.M.,vanGunsteren,W.F.,Hermans,J.,InteractionModelsforWaterinRelationtoProteinHydration.InIntermolecularForces;Pullman,B.,Ed.;Reidel:

Dordrecht,1981.

213.Jorgensen,W.L.,TransferableIntermolecularPotentialFunctionsforWater,Alcohols,andEthers.

ApplicationtoLiquidWater,J.Am.Chem.Soc.1981,103:335-340.

214.Reimers,J.R.;Watts,R.O.;Klein,M.L.Chem.Phys.1982,64:95.

215.Jorgensen,W.L.;Chandrasekhar,J.;Madura,J.D.;Impey,R.W.;Klein,M.L.,ComparisonofSimplePotentialFunctionsforSimulatingLiquidWater,J.Chem.Phys.1983,79:926.

216.Jorgensen,W.L.;Madura,J.D.Mol.Phys.1985,56:1381.

217.Berendsen,H.J.C.;Grigera,J.R.;Straatsma,T.P.J.Phys.Chem.1987,91:6269.

218.Mahoney,M.W.;Jorgensen,W.J.,AFive-SiteforLiquidWaterandtheReproductionoftheDensityAnomalybyRigid,NonpolarizablePotentialFunctions,J.Chem.Phys.2000,112:8910-8922.

219.Gltli,A.;Daura,X.;Gunsteren,W.F.van,DerivationofanImprovedandSimplePointChargeModelforLiquidWater:SPC/A,SPC/L,J.Chem.Phys.2002,116:9811-9828.

220.Stillinger,F.H.;David,C.W.,Polarizationmodelforwateranditsionicdissociationproducts,J.

Chem.Phys.1978,69:1473-1484.

221.Barnes,P.;Finney,J.L.;Nicholas,N.D.;Quinn,J.E.Nature1979,282:459-464.

222.Lybrand,T.P.;Kollman,P.A.,Water-waterandwater-ionpotentialfunctionsincludingtermsformanybodyeffects,J.Chem.Phys.1985,83:2923-2933.

223.Rullmann,J.A.C.;Duijnen,P.T.V.Mol.Phys.1988,63:451.

224.Sprik,M.;Klein,M.L.,Apolarizablemodelforwaterusingdistributedchargesites,J.Chem.Phys.

1988,89:7556-7560.

225.Ahlstr.P.;Wallqvist,A.;Engstr,S.;Jsson,B.Mol.Phys.1989,68:563-581.

226.Caldwell,J.;Dang,L.X.;Kollman,P.A.,Implementationofnonadditiveintermolecularpotentialsbyuseofmoleculardynamics:developmentofawater-waterpotentialandwater-ionclusterinteractions,J.Am.Chem.Soc.1990,112:9144-9147.

227.Cieplak,P.;Kollman,P.;Lybrand,J.,Anewwaterpotentialincludingpolarization:Applicationtogas-phase,liquid,andcrystalpropertiesofwater,J.Chem.Phys.1990,92:6755.

228.Kuwajima,S.;Warshel,A.J.Phys.Chem.1990,94:960.

229.Wallqvist,A.;Ahlstr.P.;Karlstr,G.,ANewIntermolecularEnergyCalculationScheme:

ApplicationtoPotentialSurfaceandLiquidPropertiesofWater,J.Phys.Chem.1990,94:1649.

230.Sprik,M.,Hydrogenbondingandthestaticdielectricconstantinliquidwater,J.Chem.Phys.1991,95:6762.

231.Dang,L.X.;Rice,J.E.;Caldwell,J.;Kollman,P.A.,IonSolvationinPolarizableWater:MolecularDynamicsSimulations,J.Am.Chem.Soc.1991,113:2481.

232.Wallqvist,A.Chem.Phys.1991,148:439.

233.Dang,L.X.,Thenonadditiveintermolecularpotentialforwaterrevised,J.Chem.Phys.1992,87:

2659-2660.

234.Kozack,R.E.;Jorden,P.C.,PolarizabilityEffectsinFour-ChargeModelforWater,J.Chem.Phys.

1992,96:3120-3130.

235.Cieplak,P.;Kollman,P.A.;Lybrand,T.J.Chem.Phys.1992,97:13841.

236.VanBelle,D.;Froeyen,M.;Lippens,G.;Wodak,S.J.Mol.Phys.1992,77:239.

237.Bernardo,D.N.;Ding,Y.B.;Kroghjespersen,K.;Levy,R.M.,AnAnisotropicPolarizableWaterModel:IncorporationofAll-AtomPolarizabilitiesintoMolecularMechanicsForceFields,J.Phys.

Chem.1994,98:4180-4187.

238.Zhu,S.-B.;Wong,C.F.,SensitivityAnalysisofAPolarizableWaterModel,J.Phys.Chem.1994,98:

4695.

239.Caldwell,J.W.;Kollman,P.A.,StructureandPropertiesofNeatLiquidsUsingNonadditiveMolecularDynamics:Water,Methanol,andN-Methylacetamide,J.Phys.Chem.1995,98:

6208-6219.

240.Blodholt,J.;Sampoli,M.;Vallauri,R.Mol.Phys.1995,86:149-158.

241.Ding,Y.;Bernardo,D.N.;Krogh-Jespersen,K.;Levy,R.M.,SolvationFreeEnergiesofSmallAmidesandAminesfromMolecularDynamics/FreeEnergyPerturbationSimulationUsingPairwiseAdditiveandMany-BodyPolarizablePotentials,J.Phys.Chem.1995,99:11575.

242.Chialvo,A.A.;Cummings,P.T.,Engineeringasimplepolarizablemodelforthemolecularsimulationofwaterapplicableoverwiderangesofstateconditions,J.Chem.Phys.1996,105:

8274-8281.

243.Chang,T.M.;Dang,L.X.,MoleculardynamicssimulationsofCCl4-H2Oliquid-liquidinterfacewithpolarizablepotentialmodels,J.Chem.Phys.1996,104:6772-6783.

244.Dang,L.X.;Chang,T.-M.,MolecularDynamicsStudyofWaterClusters,Liquid,andLiquid-VaporInterfaceofWaterwithMany-BodyPotentials,J.Chem.Phys.1997,106:8149.

245.Dang,L.X.,ImportanceofPolarizationEffectsinModelingtheHydrogenBondinWaterUsingClassicalMolecularDynamicsStudy,J.Phys.Chem.B1998,102:620.

246.MartinM.G.;Chen,B.;Siepmann,J.I.,ANovelMonteCarloAlgorithmforPolarizableForceFields:ApplicationtoaFluctuatingChargeModelforWater,J.Chem.Phys.1998,108:3383.

247.Haward,A.E.;Singh,U.C.;Billeter,M.;Kollman,P.A.,Many-BodyPotentialforMolecularInterfance,J.Am.Chem.Soc.1998,110:6984.

248.Saint-Martin,H.;Henández-Cobos,J.;Bernal-Uruchurtu,M.I.;Ortega-Blake,I.;Berendsen,H.J.C.

J.Chem.Phys.2000,13:10899.

249.Halgren,T.A.;Damm,W.Curr.Opin.Stuct.Biol.2001,11:236-242.

250.Stern,H.A.;Rittner,F.;Berne,B.J.;Friesner,R.A.,CombinedFluctuatingChargeandPolarizableDipoleModels:ApplicationtoaFive-SiteWaterPotentialFunction,J.Chem.Phys.2001,115:

2237-2251.

251.Eisenberg,D.;Kauzmann,W.,TheStructureandPropertiesofWater,OxfordUniversity;NewYork,1969,15.

252.Stillinger,F.H.,inTheoryChemistry:AdvancesandPerspectives,vol.3,Eyring,H.,Henderson,D.,Ed,;Academic:NewYork,1978,177-234.

253.Zhu,S.B.;Singh,S.;Robinson,G.W.,Anewflexible/polarizablewatermodel,J.Chem.Phys.1991,95:2791-2799.

254.Zhu,S.B.;Yao,S.;Zhu,J.B.;Singh,S.;Robinson,G.W.,Aflexible/polarizablesimplepointchargewatermodel,J.Phys.Chem.1991,95:6211-6217.

255.Wallqvist,A.;Berne,B.J.,Effectivepotentialsforliquidwaterusingpolarizableandnonpolarizablemodels,J.Phys.Chem.1993,97:13841-13851.

256.Soetens,J.-C.;Millot,C.,EffectofDistributingMultipolesandPolarizabilitiesonMolecularDynamicsSimulationsofWater,Chem.Phys.Lett.1995,235:22-30.

257.Svishchev,I.M.;Kusalik,P.G.;Wang,J.;Boyd,R.J.,Polarizablepoint-chargemodelforwater:

Resultsundernormalandextremeconditions,J.Chem.Phys.1996,105:4742-4750.